This report is a technical output used to assess various outline groups and where we may wish to improve or include them in the main reports.
Sometimes the outlines shown in the ‘all in area’ views may have been added to monitor QC issues and not necessarily to contain a spot feature.
Each (sub)cluster entry shows zoomed in outliens and the first two principle components of the cluster features across 363 clinical samples. The clustering of spots could be phenotypes, clinical modulation of the features or technical issues. Coloured dots on the PCA plots show the locations of manually selected centroid examples.Gel patches we show the examples in this case. Clusters with the additional analysis are marked with (Cluster).
The clusters presented are based on a historic manual mapping to SwissProt (e.g. for APOE)
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## Cache created: Oct 18 2020 18:08
## Gelcaching: Oct 18 2020 18:08 C:/Users/David/Documents/R/win-library/4.0/BiosignaturesRMarkdown_Ref.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:08 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.C3K-646-L35_47958_Cy5 455_Cy3 480 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.C3K-646-L35_52901_Cy5 445_Cy3 460 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.A4B-376-L3S_72262_Cy5 450_Cy3 455 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.A4B-376-L3S_72273_Cy5 445_Cy3 445 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.N4B-626-L36_47451_Cy5 435_Cy3 445 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.N4B-626-L36_47771_Cy5 450_Cy3 460 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.N4B-626-L36_78535_Cy5 440_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_47457_Cy5 450_Cy3 460 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_47777_Cy5 455_Cy3 465 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_52576_Cy5 450_Cy3 470 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_69729_Cy5 440_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_78541_Cy5 445_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.V4E-566-L3F_47640_Cy5 440_Cy3 445 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.V4E-566-L3F_47806_Cy5 450_Cy3 455 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.V4E-566-L3F_72058_Cy5 435_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.V4E-566-L3F_72321_Cy5 435_Cy3 445 Cy5.gel_sc.gel_1_2478_1_1943
## Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.24N-476-L3G_50008_Cy5 445_Cy3 460 Cy5.gel_sc.gel_1_2478_1_1943
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