Overview

This report is a technical output used to assess various outline groups and where we may wish to improve or include them in the main reports.

Sometimes the outlines shown in the ‘all in area’ views may have been added to monitor QC issues and not necessarily to contain a spot feature.

Each (sub)cluster entry shows zoomed in outliens and the first two principle components of the cluster features across 363 clinical samples. The clustering of spots could be phenotypes, clinical modulation of the features or technical issues. Coloured dots on the PCA plots show the locations of manually selected centroid examples.Gel patches we show the examples in this case. Clusters with the additional analysis are marked with (Cluster).

The clusters presented are based on a historic manual mapping to SwissProt (e.g. for APOE)

A1AT_1

Hard coded limits May not work well on this image

All available features in area

A1AT_2

Hard coded limits May not work well on this image

All available features in area

A1AT_3

Hard coded limits May not work well on this image

All available features in area

A1AT_3e

Hard coded limits May not work well on this image

All available features in area

A1BG

Hard coded limits May not work well on this image

All available features in area

A1BGe

Hard coded limits May not work well on this image

All available features in area

A2GL

Hard coded limits May not work well on this image

No additional features found in region

A2MG

Hard coded limits May not work well on this image

All available features in area

AACT

Hard coded limits May not work well on this image

All available features in area

AFM

Hard coded limits May not work well on this image

All available features in area

AMBP

Hard coded limits May not work well on this image

No additional features found in region

ANT3

Hard coded limits May not work well on this image

No additional features found in region

APOA4

Hard coded limits May not work well on this image

No additional features found in region

APOAI

Hard coded limits May not work well on this image

All available features in area

APOD

Hard coded limits May not work well on this image

All available features in area

APOE

Hard coded limits May not work well on this image

All available features in area

C1S

Hard coded limits May not work well on this image

No additional features found in region

CERU_1

Hard coded limits May not work well on this image

All available features in area

CERU_2

Hard coded limits May not work well on this image

All available features in area

CFAB

Hard coded limits May not work well on this image

All available features in area

CFAI

Hard coded limits May not work well on this image

No additional features found in region

CLUS (Cluster)

Hard coded limits May not work well on this image

All available features in area

CO3

Hard coded limits May not work well on this image

All available features in area

CO4B

Hard coded limits May not work well on this image

No additional features found in region

CRP

Hard coded limits May not work well on this image

No additional features found in region

FETUA

Hard coded limits May not work well on this image

All available features in area

FIBA

Hard coded limits May not work well on this image

All available features in area

FIBB

Hard coded limits May not work well on this image

All available features in area

FIBG

Hard coded limits May not work well on this image

All available features in area

HEMO

Hard coded limits May not work well on this image

All available features in area

HPT.alpha. (Cluster)

Hard coded limits May not work well on this image

All available features in area

HPT.Beta.

Hard coded limits May not work well on this image

All available features in area

IGHA

Hard coded limits May not work well on this image

All available features in area

IGHG

Hard coded limits May not work well on this image

All available features in area

IGHG.Full.

Hard coded limits May not work well on this image

All available features in area

IGHM

Hard coded limits May not work well on this image

No additional features found in region

IGLC

Hard coded limits May not work well on this image

All available features in area

IGSA

Hard coded limits May not work well on this image

No additional features found in region

IGSG

Hard coded limits May not work well on this image

No additional features found in region

PLMN

Hard coded limits May not work well on this image

All available features in area

SAMP

Hard coded limits May not work well on this image

All available features in area

THRB

Hard coded limits May not work well on this image

No additional features found in region

TRFE

Hard coded limits May not work well on this image

All available features in area

TTHY_1

Hard coded limits May not work well on this image

All available features in area

UFAI

Hard coded limits May not work well on this image

All available features in area

UnidentifiedChain2

Hard coded limits May not work well on this image

All available features in area

UnidentifiedChain3

Hard coded limits May not work well on this image

All available features in area

UnidentifiedChain4

Hard coded limits May not work well on this image

All available features in area

UnidentifiedChain5

Hard coded limits May not work well on this image

All available features in area

UnidentifiedChain6

Hard coded limits May not work well on this image

No additional features found in region

UnidentifiedChain7

Hard coded limits May not work well on this image

All available features in area

UnidentifiedChain8

Hard coded limits May not work well on this image

All available features in area

UnidentifiedChain9

Hard coded limits May not work well on this image

All available features in area

VTDB (Cluster)

Hard coded limits May not work well on this image

All available features in area

Logfile

## Cache created: Oct 18 2020 18:08
##  Gelcaching: Oct 18 2020 18:08 C:/Users/David/Documents/R/win-library/4.0/BiosignaturesRMarkdown_Ref.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:08 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.C3K-646-L35_47958_Cy5 455_Cy3 480 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.C3K-646-L35_52901_Cy5 445_Cy3 460 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.A4B-376-L3S_72262_Cy5 450_Cy3 455 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.A4B-376-L3S_72273_Cy5 445_Cy3 445 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.N4B-626-L36_47451_Cy5 435_Cy3 445 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.N4B-626-L36_47771_Cy5 450_Cy3 460 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.N4B-626-L36_78535_Cy5 440_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_47457_Cy5 450_Cy3 460 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_47777_Cy5 455_Cy3 465 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_52576_Cy5 450_Cy3 470 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_69729_Cy5 440_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.H3C-776-L3V_78541_Cy5 445_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.V4E-566-L3F_47640_Cy5 440_Cy3 445 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.V4E-566-L3F_47806_Cy5 450_Cy3 455 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.V4E-566-L3F_72058_Cy5 435_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.V4E-566-L3F_72321_Cy5 435_Cy3 445 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.24N-476-L3G_50008_Cy5 445_Cy3 460 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.24N-476-L3G_72282_Cy5 435_Cy3 455 Cy5.gel_sc.gel_1_2478_1_1943
##  Gelcaching: Oct 18 2020 18:09 Data/alignedImages/FixedRefStd_std2Cce_SCorS3/CBA.24N-476-L3G_76586_Cy5 440_Cy3 450 Cy5.gel_sc.gel_1_2478_1_1943
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